I spoke to them about this last year, They told me that is should work. There may be a difference in the wiring harness though.
The real issue though is what potential gains / advantage there would be in a stand-alone configuration.
From what I know, with the Bosch unit, they have several canned tunes for different configurations. They are not able or possibly willing to do a custom dyno tune with this unit (a lot of politics going on in this shop), and I am not sure how user friendly the unit would be to tune by a 3rd party (i.e. Frank Smith or Randy Mueller etc...)
IMHO, If I were looking for a stand-alone option, I would consider AEM
http://www.motoiq.com/MagazineArticl...-Play-EMS.aspx