Alright guys, so I got the light again and I pulled over and pushed the top down manually after it was already down until I heard it click. Afterwards, I put the top up turned the car off for a few hours. I then put the top down, took the car on the highway for an hour and didn't get the light!
Hopefully the problem is resolved for good. Thanks everybody for all your advice, if anyone is having a similar problem I suggest they trying pushing the top down manually until you hear a clicking sound after the red light starts flashing.
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